Pole position pro Velkou cenu Valencie získal Viňáles před Rinsem a Doviziosem
Výsledky 2. kvalifikace (na suché trati)
| P. | Jezdec | # | Tým | Motocykl | Km/h | Čas | |
| 1. |  |
Maverick Viñáles | 25 | Movistar Yamaha MotoGP | Yamaha | 313,7 | 1:31,312 |
| 2. | |
Álex Rins | 42 | Team SUZUKI ECSTAR | Suzuki | 312 | 1:31,380 |
| 3. |  |
Andrea Dovizioso | 4 | Ducati Team | Ducati | 318,5 | 1:31,392 |
| 4. | |
Danilo Petrucci | 9 | Alma Pramac Racing | Ducati | 314,3 | 1:31,414 |
| 5. | |
Marc Márquez | 93 | Repsol Honda Team | Honda | 315,9 | 1:31,442 |
| 6. | |
Pol Espargaró | 44 | Red Bull KTM Factory Racing | KTM | 315 | 1:31,577 |
| 7. | |
Andrea Iannone | 29 | Team SUZUKI ECSTAR | Suzuki | 311,6 | 1:31,629 |
| 8. | |
Aleix Espargaró | 41 | Aprilia Racing Team Gresini | Aprilia | 308,2 | 1:31,630 |
| 9. | |
Dani Pedrosa | 26 | Repsol Honda Team | Honda | 314,3 | 1:32,140 |
| 10. |  |
Jack Miller | 43 | Alma Pramac Racing | Ducati | 311 | 1:32,145 |
| 11. |  |
Johann Zarco | 5 | Monster Yamaha Tech 3 | Yamaha | 313,1 | 1:32,179 |
| 12. |  |
Michele Pirro | 51 | Ducati Team | Ducati | 318,4 | 1:32,310 |
Výsledky 1. kvalifikace (na suché trati)
| P. | Jezdec | # | Tým | Motocykl | Km/h | Čas | |
| 1. | |
Andrea Iannone | 29 | Team SUZUKI ECSTAR | Suzuki | 313,6 | 1:31,382 |
| 2. | |
Maverick Viñáles | 25 | Movistar Yamaha MotoGP | Yamaha | 314,9 | 1:31,858 |
| 3. | |
Jorge Lorenzo | 99 | Ducati Team | Ducati | 315,4 | 1:31,900 |
| 4. |  |
Takaaki Nakagami | 30 | LCR Honda IDEMITSU | Honda | 307,6 | 1:31,928 |
| 5. | |
Franco Morbidelli | 21 | EG 0,0 Marc VDS | Honda | 308,8 | 1:32,385 |
| 6. | |
Valentino Rossi | 46 | Movistar Yamaha MotoGP | Yamaha | 311,7 | 1:32,452 |
| 7. |  |
Thomas Lüthi | 12 | EG 0,0 Marc VDS | Honda | 308,9 | 1:32,545 |
| 8. |  |
Karel Abraham | 17 | Angel Nieto Team | Ducati | 313,6 | 1:32,547 |
| 9. | |
Álvaro Bautista | 19 | Angel Nieto Team | Ducati | 314,3 | 1:32,568 |
| 10. |  |
Stefan Bradl | 6 | LCR Honda CASTROL | Honda | 319 | 1:32,708 |
| 11. |  |
Hafizh Syahrin | 55 | Monster Yamaha Tech 3 | Yamaha | 312,1 | 1:32,749 |
| 12. |  |
Bradley Smith | 38 | Red Bull KTM Factory Racing | KTM | 309,2 | 1:33,011 |
| 13. | |
Jordi Torres | 81 | Reale Avintia Racing | Ducati | 311,4 | 1:34,427 |
| 14. | |
Scott Redding | 45 | Aprilia Racing Team Gresini | Aprilia | 306,7 | 1:35,171 |
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Marc Márquez (Repsol Honda Team) získal v Malajsii 70. vítězství své kariéry. Zdálo se, že diváci uvidí ostrý boj Márqueze a Valentina Rossiho (Movistar Yamaha MotoGP), ale závod skončil pro Rossiho katastrofálně, nehodou. Pódium v Sepangu doplnili Álex Rins (Team Suzuki Ecstar) a Johann Zarco (Monster Yamaha Tech 3).
